=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.1nb2 if test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j1 all_p; \ else \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j1 all_r; \ fi gmake[1]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' Build session ID: FF7B30F0-2BEA-4BE6-9DD8-71917546945D /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D ncbicfg.c -o ncbicfg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:4930:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return ParseEscapes(s_Unquote(move(str), n_read)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:4998:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return s_ParseJsonEncodeEscapes(s_Unquote(move(str), n_read)); ^ std:: 2 warnings generated. /ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT 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-DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp -o expr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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resource_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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/opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 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-stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp -o itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/i/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:2844:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] return x_IsTruncatedJsonNumber(testString) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:2844:12: note: cast one or both operands to int to silence this warning 1 warning generated. nclude/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp -o format_guess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp -o ascii85.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp -o md5.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp -o unicode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 1 warning generated. last+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp -o dictionary.o 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp -o line_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 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-stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp -o distribution.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp:283:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return new SDeferredWriter(m_ThreadPool, m_Writer, move(meta)); ^ std:: 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:33: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:107:105: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXTerm(unique_ptr& x, unsigned int min, unsigned int max, bool lazy = false) : m_RegX(move(x)), m_Min(min), m_Max(max), m_Lazy(lazy) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:121:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXConcat(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:132:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXSelect(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:154:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXAssert(EAssert a, unique_ptr& x) : m_Assert(a), m_RegX(move(x)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:318:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:328:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:338:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:349:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:359:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1183:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w.push_back(move(p)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1188:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w[i]->Merge(move(w[j])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1192:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Merge(move(w[0])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1203:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_States.push_back(move(state)); ^ std:: 13 warnings generated. D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k 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-D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -j1 mark-as-disabled gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C bzip2 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c. 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-I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/nc/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ssl_tls13_keys.o) has no symbols bi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c. Updating dependency/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if ((one = (s_Shmid[0] != -1)) | (two = (s_Shmid[1] != -1))) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: note: cast one or both operands to int to silence this warning 1 warning generated. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -O/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2757:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic ignored "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2762:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic warning "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:3019:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2973:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 3 warnings generated. s -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:52: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] || SERV_EqualInfo(skip, &svc->info))) { ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:46: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] } else if (SERV_EqualInfo(skip, &svc->info)) ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:32: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] cand[n].cand.info = &svc->info; ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:38: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { ^~~~~~~~~ 4 warnings generated. t-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c -o parson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:41: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:471:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream(move(stream)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:514:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_StatusText = move(status_text); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:791:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:791:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:925:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream = move(stream); ^ std:: 9 warnings generated. -71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:129:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CServiceDiscovery::TServer server(move(address), 1.0); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:130:64: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return make_shared(1, move(server)); ^ std:: 6 warnings generated. _RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ssl_tls13_keys.o) has no symbols _conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 all /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:595:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Masters.insert(move(address)); ^ std:: 6 warnings generated. last+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-srIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_client_factory.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. c/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-stringIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp:85:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Writer = move(writer); ^ std:: 5 warnings generated. s -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANTIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:315:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Address(move(address)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:317:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ThrottleStats(move(throttle_params)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:368:14: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] rv = move(args.GetArgs()); ^ std:: 8 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:398:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Construct(m_ServerPool->FindOrCreateServerImpl(move(address))); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:746:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Impl->m_EnforcedServer = move(address); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:806:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = new SNetServerInPool(move(server_address), m_PropCreator(), m_ThrottleParams); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:826:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = FindOrCreateServerImpl(m_EnforcedServer.host == 0 ? move(server_address) : m_EnforcedServer); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:835:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return m_ServerPool->GetServer(this, move(server_address)); ^ std:: 10 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp:87:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto result = m_SubConfigs.emplace(section, move(sub_config)); ^ std:: 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILDIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. _SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. ervices/netschedule_key.cpp -o netschedule_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. kg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp -o util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp:1052:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp:1052:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/impl/netstorage_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SEIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. SSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:34: warning: taking address of packed member 'status' of class or structure 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] HINFO_Status(hinfo, &load.status); ^~~~~~~~~~~ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C helpers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/buildld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found /biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/iIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectio.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. nclude -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ 18 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp -o typemap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp -o continfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp -o memberid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp -o memberlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp -o item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp -o classinfob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/choiceptr.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. bi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp -o member.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp -o classinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp -o choice.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objcopy.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp -o objistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp -o objostr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp -o objcopy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp -o iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp -o serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/pack_string.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. .14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp -o pack_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp -o exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp -o objhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp -o objlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp -o objstack.o /Users/pbulk/build/biology/ncbi-blast+/work/.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythonIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. 3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp -o serializable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 all /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols warning: /Library/Developer/CommandLineTools/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency informatIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ion for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. 4 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp -o type.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/wold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found rk/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/w/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ork/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-c/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ommon -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall 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-I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lptld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated hread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -j1"; export MAKE; \ ( cd $i && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j1" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 gmake[5]: Leaving directory Warning: (810.1) No service name provided for CTrackMgrClient '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/Date.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/Date_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j1"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp:15: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Linkage_evidence.cpp:97:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] temp_vector.push_back(move(new_evid)); ^ std:: 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biologIn file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1919:21: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 2 warnings generated. In file included from seqblock__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqfeat__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqres__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. y/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqalign__.cpp -o seqalign__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqblock__.cpp -o seqblock__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqfeat__.cpp -o seqfeat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqloc__.cpp -o seqloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqres__.cpp -o seqres__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REIn file included from seqtable__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqalign___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqblock___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqfeat___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqtable__.cpp -o seqtable__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqalign___.cpp -o seqalign___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqblock___.cpp -o seqblock___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqfeat___.cpp -o seqfeat___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/woIn file included from seqloc___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqres___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from seqtable___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seqport_util.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_data.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. rk/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqloc___.cpp -o seqloc___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqres___.cpp -o seqres___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D seqtable___.cpp -o seqtable___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/cIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:1873:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2412:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_mapper.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-regIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_loc_from_string.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ister -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/Bioseq_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/gb_release_file.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] replies = move(ProcessSomeRequests(packet)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blast/names.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blast/NCBI_Blast4_module.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j1"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 all In file included from mmdb1__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from mmdb2__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from mmdb3__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from mmdb1___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/builIn file included from mmdb2___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from mmdb3___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. d/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const value_type' (aka 'const ncbi::CRef') [-Wrange-loop-construct] for ( const auto root_comment : GetComments() ) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const value_type &' (aka 'const ncbi::CRef &') to prevent copying for ( const auto root_comment : GetComments() ) { ^~~~~~~~~~~~~~~~~~~~~~~~~ & 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++1In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. 7 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/blast_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : TBaseClient(move(c)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:84:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_svc(move(c.m_Http_svc)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:85:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_session(move(c.m_Http_session)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:86:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Rpc_client(move(c.m_Rpc_client)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:11: note: in instantiation of member function 'ncbi::CGridRPCBaseClient<>::CGridRPCBaseClient' requested here : TBaseClient(move(c)), ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: 15 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. +/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/valerr/ValidErrItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/Comment_rule.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 19085 (make_asn) /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build/bioloIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/GC_Assembly_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 2 warnings generated. gy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/Feat_qual_choice.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/Feat_qual_choice.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: 8 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp:8: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/Apply_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/Field_type.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: 8 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' /opt/pkg/bin/gmake -C search_by_rsid -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' /opt/pkg/bin/gmake -C primary_track -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp. UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_table_setters.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. pdating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_annot_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/snp_annot_info.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. /work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/feat_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_object_index.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. E6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-stIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: note: remove std::move call here tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^~~~~ ~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: note: remove std::move call here tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^~~~~ ~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: note: remove std::move call here tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^~~~~ ~ 7 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. rings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp -o data_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp -o priority.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/prefetch_impl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/prefetch_actions.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp -o scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. +-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_annot_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_annot_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/align_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. st+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. lang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/includIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_split_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_type_index.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_loc_mapper.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. e/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp:3694:17: warning: variable 'index' set but not used [-Wunused-but-set-variable] TSeqPos index = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader_factory.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_graph_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqres/Seq_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqres/Seq_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -WaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_align_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ll -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythonIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. 3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/inclIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/edits_db_saver.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ude -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depreIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp:308:56: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/create_defline.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/MolInfo.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/MolInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:1711:52: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 2 warnings generated. cated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/buildIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/obj_sniff.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ 2 warnings generated. /biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build/biology/ncbi-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-registerIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/blob_splitter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp:334:12: warning: variable 'row' set but not used [-Wunused-but-set-variable] size_t row = 0; ^ 2 warnings generated. work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/object_splitinfo.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/annot_piece.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/chunk_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/place_id.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. cpp -o object_splitinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. er_message_handler.cpp -o reader_message_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:513:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] ids = move(data.ids); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:517:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:574:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_CurrentSeqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1493:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] vecLinkEvids.push_back(move(pNewLinkEvid)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1498:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] delta_ext.Set().push_back(move(gap_ds)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1522:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().emplace_back(move(pDesc)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:2051:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 8 warnings generated. kg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_error_reporter.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:859:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. t+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -WnoIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:133:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] titles = move(data.titles); ^ std:: 2 warnings generated. -format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/getfeature.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/featuredump.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. FSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp:783:12: warning: variable 'record_counter' set but not used [-Wunused-but-set-variable] size_t record_counter = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Annotdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Annotdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. /work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /Users/pbulk/build/bioloIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/so_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-reIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gister -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/bed_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. aseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/worIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta_exception.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:322:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SaveMods(move(accepted_mods), handle_existing, m_Mods); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:347:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:350:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:360:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:366:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:698:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seq_inst.SetHist().SetReplaces().SetIds() = move(secondary_ids); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:306:17: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here CModData( mod.GetName(), kEmptyStr); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:527:30: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here fPostMessage(CModData( canonicalName, kEmptyStr), e.GetMsg(), eDiag_Error, eModSubcode_Undefined); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:540:22: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here fPostMessage(CModData("",""), msg, eDiag_Info, eModSubcode_Applied); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1684:31: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here ::new((void*)__p) _Up(_VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1562:21: note: in instantiation of function template specialization 'std::allocator>::construct' requested here __a.construct(__p, _VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1413:14: note: in instantiation of function template specialization 'std::allocator_traits>>::__construct' requested here {__construct(__has_construct(), ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/list:1682:26: note: in instantiation of function template specialization 'std::allocator_traits>>::construct' requested here __node_alloc_traits::construct(__na, _VSTD::addressof(__hold->__value_), _VSTD::forward<_Args>(__args)...); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:774:22: note: in instantiation of function template specialization 'std::list::emplace_back' requested here mods.emplace_back(name, value); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: 15 warnings generated. k/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -WIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:324:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetSubtype().push_back(move(pSubSource)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:348:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:373:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:424:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:446:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:482:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:515:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:594:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dbtags.push_back(move(pDbtag)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:661:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetOrgMods().push_back(move(pOrgMod)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:818:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pField->SetData().SetFields().push_back(move(pSubfield)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:941:34: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] .push_back(move(pPub)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ 13 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:133:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetName() = move(names); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:143:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetEc() = move(ec_numbers); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:153:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetActivity() = move(activity); ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. no-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/glimmer_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. bi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_IDIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2459:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. =FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. st-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -stIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. d=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 2 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1354:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:304:9: warning: variable 'index' set but not used [-Wunused-but-set-variable] int index = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. F7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/seqloc__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. rc/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /opt/pkg/bin/gmake -C cassandra -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /opt/pkg/bin/gmake -C ipg -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /opt/pkg/bin/gmake -C genbank -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/incluIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. de/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. L -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/inclIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:12: warning: variable 'unused_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:30: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ 3 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated ld: warning: ignoring duplicate libraries: '-lz' ude -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.dylib .libncbi_xreader-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader-dll.dylib -o libncbi_xreader-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.dylib /bin/ln -f .ncbi_xreader-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /Users/pbulk/build/biology/ncbiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Split_Info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqsplit/ID2S_Split_Info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated -blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.dylib .libncbi_xloader_genbank-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank-dll.dylib -o libncbi_xloader_genbank-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.dylib /bin/ln -f .ncbi_xloader_genbank-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C cache -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.dylib .libncbi_xreader_cache-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_cache-dll.dylib -o libncbi_xreader_cache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbild: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated -blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_cache.o writer_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.dylib /bin/ln -f .ncbi_xreader_cache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -C pubseq -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /opt/pkg/bin/gmake -C id2 -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.dylib .libncbi_xreader_id2-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id2-dll.dylib -o libncbi_xreader_id2-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id2.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.dylib /bin/ln -f .ncbi_xreader_id2-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -C id1 -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.dylib .libncbi_xreader_id1-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1-dll.dylib -o libncbi_xreader_id1-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id1.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.dylib /bin/ln -f .ncbi_xreader_id1-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -C pubseq2 -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /opt/pkg/bin/gmake -C gicache -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ 5 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.dylib .libncbi_xreader_gicache-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_gicache-dll.dylib -o libncbi_xreader_gicache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated /libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_gicache.o gicache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.dylib /bin/ln -f .ncbi_xreader_gicache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C lds2 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C patcher -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /opt/pkg/bin/gmake -C asn_cache -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /opt/pkg/bin/gmake -C cdd -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /opt/pkg/bin/gmake -C simple -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -C alnmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_builders.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:252:16: warning: variable 'seg' set but not used [-Wunused-but-set-variable] size_t seg = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipeIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning match1->m_ChainScore == match2->m_ChainScore && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning (aln_seq1->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq1->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning aln_seq1->m_StrandScore < 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore < 0 && ^ ( 6 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning if (plus && prev_start_plus_len < start || ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] !plus && start_plus_len < (TSeqPos) prev_start) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning !plus && start_plus_len < (TSeqPos) prev_start) { ^ ( ) 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. bi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/srIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. c/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/aln_container.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ython3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C cddalignview -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' /opt/pkg/bin/gmake -C manip -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' /opt/pkg/bin/gmake -C eutils -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT linkout/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /opt/pkg/bin/gmake -C egquery -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all File egquery.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -C elink -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all File elink.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -C epost -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all File epost.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -C esearch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all File esearch.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -C espell -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all File espell.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -C esummary -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all File esummary.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -C linkout -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /opt/pkg/bin/gmake -C einfo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all File einfo.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -C uilist -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all File uilist.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -C ehistory -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all File ehistory.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -C efetch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all File efetch.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:486:81: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] if (!affiliation.empty()) affiliations.emplace_back(move(affiliation)); ^ std:: 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/efetch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/einfo.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fnoIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/esearch.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/egquery.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/epost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/elink.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/esummary.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/espell.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/ehistory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /opt/pkg/bin/gmake -C edit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_citmatch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: unused variable 'cds_range' [-Wunused-variable] auto cds_range = copy_feat->GetLocation().GetTotalRange(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] switch (seqmap_ci.GetType()) { ^~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: note: add missing switch cases switch (seqmap_ci.GetType()) { ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] CCdregion_translate::TranslateCdregion(data, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:965:5: note: 'TranslateCdregion' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtooIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/string_constraint.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ls/edit/autodef_with_tax.cpp -o autodef_with_tax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/cds_fix.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. kg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/loc_edit.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/mail_report.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqtable/Seq_table.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqtable/Seq_table_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] TSeqPos current = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:396:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] gap.SetSeq_data().SetGap().SetLinkage_evidence().emplace_back(move(pEvidence)); ^ std:: 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/source_edit.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/seqid_guesser.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:356:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, desc); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/remote_updater.hpp:114:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeqdesc& obj); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:586:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/remote_updater.hpp:112:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeq_entry& entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/eutils_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/gap_trim.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Cdregion.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Cdregion_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UsIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp:385:17: warning: lambda capture 'context' is not used [-Wunused-lambda-capture] [this, &context](CObjectIStream& in, const CObjectTypeInfo& type) ~~~^~~~~~~ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/huge_asn_loader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/huge_asn_macro_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /opt/pkg/bin/gmake -C pubmed_fetch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /opt/pkg/bin/gmake -C pubmed_citmatch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /opt/pkg/bin/gmake -C test_remote_updater -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C cleanup -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] int m_Dummy; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blastIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pXref->GetId().IsLocal() & ^~~~~~~~~~~~~~~~~~~~~~~~~~ && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: note: cast one or both operands to int to silence this warning 2 warnings generated. -2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/workIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/cleanup/huge_file_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. /ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C format -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /Users/pbulk/build/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Delta_ext.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Delta_ext_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqblock/PIR_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqblock/PIR_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. bi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /Users/pbulk/buIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqblock/GB_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqblock/GB_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ild/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ 2 warnings generated. UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biolIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: unused function 's_NsAreGaps' [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ogy/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp -o context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/Cit_book.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/biblio/Cit_book_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: unused function 's_get_anchor_html' [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/format_item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/ostream_text_ostream.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. atter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/accession_item.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/gap_item.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/gather_iter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/OrgMod.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqfeat/OrgMod_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -C validator -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' /opt/pkg/bin/gmake -C asniotest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' /opt/pkg/bin/gmake -C align -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' /opt/pkg/bin/gmake -C seqmasks_io -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. YPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C align_format -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp:1574:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp:1239:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] size_t line_length = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/align_format/vectorscreen.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] const CSeq_align& da = *x_OrigAlignsById[*di]; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C snputil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' /opt/pkg/bin/gmake -C uudutil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' /opt/pkg/bin/gmake -C variation -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' /opt/pkg/bin/gmake -C writers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' /opt/pkg/bin/gmake -C import -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' /opt/pkg/bin/gmake -C flatfile -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /opt/pkg/bin/gmake -C ctools -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' /opt/pkg/bin/gmake -C sra -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C readers -j1 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C sra -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=sraread -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=srareadx -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -C bam -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/bam TMPL=bamread -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C data_loaders -j1 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /opt/pkg/bin/gmake -C sra -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C bam -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C csra -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C wgs -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /opt/pkg/bin/gmake -C vdbgraph -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C snp -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C algo -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sequence/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT primer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /opt/pkg/bin/gmake -C dustmask -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -C winmask -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency inIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. formation for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] bool ambig; ^ 2 warnings generated. D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UserIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. s/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. p -o seq_masker_ostat_opt_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-fIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/win_mask_config.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ormat-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/inIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. clude -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -C sequence -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /opt/pkg/bin/gmake -C composition_adjustment -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] double corr_factor = 0.0; /* correlation between how p_query ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ 2 warnings generated. -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -C core -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_f/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. ilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /Users/pbulk/build//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register 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-msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cw/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. rapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -C dbindex -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/dbindex/dbindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/dbindex/sequence_istream.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] unsigned long word_size_; /**< Target word size. */ ^ 2 warnings generated. bi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C makeindex -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o mkindex_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makembindex strip makembindex /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C dbindex_search -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_engine.c -o .core_blast_engine.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_extend.c -o .core_blast_extend.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_filter.c -o .core_blast_filter.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_hits.c -o .core_blast_hits.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_itree.c -o .core_blast_itree.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -IIn file included from .core_blast_kappa.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. /opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_message.c -o .core_blast_message.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_options.c -o .core_blast_options.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_psi.c -o .core_blast_psi.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBIn file included from .core_blast_psi_priv.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. I_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_seg.c -o .core_blast_seg.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_setup.c -o .core_blast_setup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SIn file included from .core_blast_stat.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ 2 warnings generated. In file included from .core_blast_traceback.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. AFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_stat.c -o .core_blast_stat.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_util.c -o .core_blast_util.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_gapinfo.c -o .core_gapinfo.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_greedy_align.c -o .core_greedy_align.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_link_hsps.c -o .core_link_hsps.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_lookup_util.c -o .core_lookup_util.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_pattern.c -o .core_pattern.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_phi_extend.c -o .core_phi_extend.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_posit.c -o .core_blast_posit.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_program.c -o .core_blast_program.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_tune.c -o .core_blast_tune.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_sw.c -o .core_blast_sw.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_split_query.c -o .core_split_query.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/In file included from .core_jumper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ 1 warning generated. api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_boost_erf.c -o .core_boost_erf.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_jumper.c -o .core_jumper.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulIn file included from .core_hspfilter_mapper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. k/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D .core_spliced_hits.c -o .core_spliced_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-7In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:530:17: warning: variable 'subject_pos' set but not used [-Wunused-but-set-variable] int subject_pos = hh->hsp->subject.offset; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:462:9: warning: variable 'num_hsps' set but not used [-Wunused-but-set-variable] int num_hsps = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. 1917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. o/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. apper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] Int2 rv = BlastProgram2Number(program.c_str(), &retval); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] int l_total_bytes=0, n_read; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. l-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -DIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. _REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/UsIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] reader.Read(false, true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEAIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. -4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. cpp -o rps_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -WIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. all -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-commIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqConvert::Convert(m_SequenceData, m_Encoding, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqManip::ReverseComplement(m_SequenceData, ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. on -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BIIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. TS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_IIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:821:9: warning: variable 'db_seq_length' set but not used [-Wunused-but-set-variable] int db_seq_length = db_seq_offsets[db_oid + 1] - db_seq_offsets[db_oid]; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. NTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/workIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] int m_QueryIndex; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. /ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_seqsrc.c .core_ncbi_math.c .core_blast_engine.c .core_index_ungapped.c .core_blast_filter.c .core_lookup_wrap.c .core_gapinfo.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_hspstream.c .core_blast_nascan.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_psi_priv.c .core_blast_encoding.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_greedy_align.c .core_lookup_util.c .core_pattern.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_matrix_freq_ratios.c .core_blast_parameters.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_gapalign.c .core_blast_seg.c .core_blast_query_info.c .core_split_query.c .core_blast_sw.c .core_blast_extend.c .core_blast_options.c .core_blast_tune.c .core_phi_gapalign.c gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -C proteinkmer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:652:6: warning: variable 'hashCount' set but not used [-Wunused-but-set-variable] int hashCount=0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:737:6: warning: variable 'lsh_hits' set but not used [-Wunused-but-set-variable] int lsh_hits=0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C format -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:49: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:51: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 7 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. lib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/format/sam_formatter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_async_format.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -C blastinput -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. last_input.cpp -o blast_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clangIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] const bool kFilterByDefault = false; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] const int kMaxValue = static_cast(GetCpuCount()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here inline NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C blast_sra_input -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /opt/pkg/bin/gmake -C igblast -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp:199:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -C gumbel_params -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /opt/pkg/bin/gmake -C vdb -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -C unit_tests -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /opt/pkg/bin/gmake -C blast_format -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /opt/pkg/bin/gmake -C seqdb_reader -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -j1 mark-as-disabled gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -j1 mark-as-disabled gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' /opt/pkg/bin/gmake -C segmask -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -C align -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' /opt/pkg/bin/gmake -C structure -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' /opt/pkg/bin/gmake -C gnomon -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' /opt/pkg/bin/gmake -C tree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' /opt/pkg/bin/gmake -C phy_tree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' /opt/pkg/bin/gmake -C seqqa -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' /opt/pkg/bin/gmake -C cobalt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' /opt/pkg/bin/gmake -C text -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' /opt/pkg/bin/gmake -C volume_merge -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' /opt/pkg/bin/gmake -C primer -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' /opt/pkg/bin/gmake -C id_mapper -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' /opt/pkg/bin/gmake -C misc -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT clog/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /opt/pkg/bin/gmake -C third_party -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' /opt/pkg/bin/gmake -C third_party_static -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' /opt/pkg/bin/gmake -C clog -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' /opt/pkg/bin/gmake -C grid_cgi -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /opt/pkg/bin/gmake -C xmlwrapp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /opt/pkg/bin/gmake -C eutils_client -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' /opt/pkg/bin/gmake -C hydra_client -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' /opt/pkg/bin/gmake -C discrepancy -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' /opt/pkg/bin/gmake -C xmlreaders -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /opt/pkg/bin/gmake -C hgvs -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' /opt/pkg/bin/gmake -C netstorage -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' /opt/pkg/bin/gmake -C jsonwrapp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C biosample_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' /opt/pkg/bin/gmake -C data_loaders_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /opt/pkg/bin/gmake -C lapackwrapp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /opt/pkg/bin/gmake -C pmcidconv_client -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C cgi_redirect -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' /opt/pkg/bin/gmake -C gui -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' /opt/pkg/bin/gmake -C app -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn2asn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gff_deconcat/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gff_deconcat/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gff_deconcat/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/sub_fuse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/sub_fuse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/sub_fuse/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sub_fuse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT feat_import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netcache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netcache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netcache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netcache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dblb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dblb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dblb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dblb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/tls/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/tls/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/tls/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tls/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pubseq_gateway/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pubseq_gateway/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pubseq_gateway/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /opt/pkg/bin/gmake -C asn2asn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' /opt/pkg/bin/gmake -C asn2fasta -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' /opt/pkg/bin/gmake -C asn2flat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' /opt/pkg/bin/gmake -C flat2asn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' /opt/pkg/bin/gmake -C asnval -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' /opt/pkg/bin/gmake -C asn_cleanup -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /opt/pkg/bin/gmake -C id1_fetch -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastp_node.o blastp_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-statild: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' c -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastp strip blastp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastn_node.o blastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlarld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lgbseq-static', '-lmedlars-static', '-lmla-static', '-lpthread', '-lpubmed-static', '-lsubmit-static', '-lvalid-static', '-lvariation-static', '-lxalnmgr-static', '-lxcleanup-static', '-lxformat-static', '-lxlogging-static', '-lxobjread-static', '-lz' s-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastn strip blastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastx_node.o blastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-statild: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' c -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastx strip blastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastn_node.o tblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxbld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' last-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastn strip tblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lmld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -Wl,-framework,ApplicationServices -lpthread -o tblastx strip tblastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O psiblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' v -lm -Wl,-framework,ApplicationServices -lpthread -o psiblast strip psiblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpsblast_node.o rpsblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-sld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' tatic -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpsblast strip rpsblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpstblastn_node.o rpstblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-stld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' atic -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpstblastn strip rpstblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_formatter.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_formatter strip blast_formatter /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_report.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_report strip blast_report /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_report gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/deltablast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O deltablast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o deltablast strip deltablast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seedtop_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lmld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -Wl,-framework,ApplicationServices -lpthread -o seedtop strip seedtop /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -C convert_seq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' /opt/pkg/bin/gmake -C nmer_repeats -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' /opt/pkg/bin/gmake -C objmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' /opt/pkg/bin/gmake -C gi2taxid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' /opt/pkg/bin/gmake -C netschedule -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' /opt/pkg/bin/gmake -C grid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' /opt/pkg/bin/gmake -C netstorage -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' /opt/pkg/bin/gmake -C igblast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' /opt/pkg/bin/gmake -C winmasker -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:234:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:234:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] static inline char iupacna_to_blastna( char c ) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylibld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' :/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o windowmasker strip windowmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -C dustmasker -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o dust_mask_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o dustmasker strip dustmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -C segmasker -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lz' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O segmasker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o segmasker strip segmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcmd.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,Applicatiold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' nServices -lpthread -o blastdbcmd strip blastdbcmd /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeblastdb.o masked_range_set.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeblastdb strip makeblastdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:594:18: warning: variable 'line_ctr' set but not used [-Wunused-but-set-variable] unsigned int line_ctr = 0; ^ 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_aliastool.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' o2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_aliastool strip blastdb_aliastool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcheck.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ApplicationServices -lpthread -o blastdbcheck strip blastdbcheck /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit', '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O convert2blastmask.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o convert2blastmask strip convert2blastmask /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit', '-lvariation', '-lxalnmgr', '-lxcgi', '-lxconnect', '-lxconnext', '-lxhtml', '-lxlogging', '-lxncbi', '-lxobjread', '-lxser', '-lxutil', '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcp.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcp strip blastdbcp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeprofiledb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' lv -lm -Wl,-framework,ApplicationServices -lpthread -o makeprofiledb strip makeprofiledb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:385:13: warning: variable 'vol_ctr' set but not used [-Wunused-but-set-variable] int vol_ctr(0); ^ 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_convert.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_convert strip blastdb_convert /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_path.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ApplicationServices -lpthread -o blastdb_path strip blastdb_path /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/bitset/bmsse4.h:1577:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:60: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] bool success = m_DB->EndBuild(); ^ 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=FF7B30F0-2BEA-4BE6-9DD8-71917546945D /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeclusterdb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' lv -lm -Wl,-framework,ApplicationServices -lpthread -o makeclusterdb strip makeclusterdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeclusterdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -C blastvdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' /opt/pkg/bin/gmake -C vecscreen -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' /opt/pkg/bin/gmake -C agpconvert -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' /opt/pkg/bin/gmake -C id2_fetch -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' /opt/pkg/bin/gmake -C agp_validate -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' /opt/pkg/bin/gmake -C objextract -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' /opt/pkg/bin/gmake -C bdb_env_keeper -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /opt/pkg/bin/gmake -C nw_aligner -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' /opt/pkg/bin/gmake -C speedtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' /opt/pkg/bin/gmake -C idmapper -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' /opt/pkg/bin/gmake -C formatguess -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' /opt/pkg/bin/gmake -C multireader -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' /opt/pkg/bin/gmake -C read_blast_result -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' /opt/pkg/bin/gmake -C splign -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' /opt/pkg/bin/gmake -C hfilter -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' /opt/pkg/bin/gmake -C annotwriter -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' /opt/pkg/bin/gmake -C compart -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' /opt/pkg/bin/gmake -C streamtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' /opt/pkg/bin/gmake -C lds2_indexer -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' /opt/pkg/bin/gmake -C discrepancy_report -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' /opt/pkg/bin/gmake -C biosample_chk -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' /opt/pkg/bin/gmake -C bsdiff -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' /opt/pkg/bin/gmake -C gap_stats -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' /opt/pkg/bin/gmake -C table2asn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' /opt/pkg/bin/gmake -C srcchk -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' /opt/pkg/bin/gmake -C tableval -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' /opt/pkg/bin/gmake -C ncbi_encrypt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /opt/pkg/bin/gmake -C ssub_fork -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' /opt/pkg/bin/gmake -C asn_cache -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' /opt/pkg/bin/gmake -C magicblast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' /opt/pkg/bin/gmake -C multipattern -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' /opt/pkg/bin/gmake -C prt2fsm -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' /opt/pkg/bin/gmake -C pub_report -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' /opt/pkg/bin/gmake -C gff_deconcat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' /opt/pkg/bin/gmake -C sub_fuse -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' /opt/pkg/bin/gmake -C feat_import -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C split_cache -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C wig2table -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C netcache -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C rmblastn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C dblb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C tls -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C idfetch -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C pubseq_gateway -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' /opt/pkg/bin/gmake -C sample -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' /opt/pkg/bin/gmake -C internal -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build'