=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Installing for libpll-0.3.2 => Generating pre-install file lists Making install in src cd .. && /opt/pkg/bin/bmake am--refresh /opt/pkg/bin/mksh ./config.status --recheck .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib' /opt/pkg/bin/mksh ../libtool --mode=install /usr/bin/install -c -o pbulk -g staff libpll.la '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g staff .libs/libpll.0.dylib /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib/libpll.0.dylib libtool: install: (cd /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib && { ln -s -f libpll.0.dylib libpll.dylib || { rm -f libpll.dylib && ln -s libpll.0.dylib libpll.dylib; }; }) libtool: install: /usr/bin/install -c -o pbulk -g staff .libs/libpll.lai /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib/libpll.la libtool: install: /usr/bin/install -c -o pbulk -g staff .libs/libpll.a /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib/libpll.a libtool: install: chmod 644 /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib/libpll.a libtool: install: ranlib /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/lib/libpll.a libtool: warning: remember to run 'libtool --finish /opt/pkg/lib' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/include/libpll' /usr/bin/install -c -o pbulk -g staff -m 644 pll.h '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/include/libpll' Making install in man cd .. && /opt/pkg/bin/bmake am--refresh /opt/pkg/bin/mksh ./config.status --recheck .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/man/man3' /usr/bin/install -c -o pbulk -g staff -m 644 libpll.3 '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/man/man3' Making install in examples cd .. && /opt/pkg/bin/bmake am--refresh /opt/pkg/bin/mksh ./config.status --recheck .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/heterotachy' /usr/bin/install -c -o pbulk -g staff -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/heterotachy' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/lg4' /usr/bin/install -c -o pbulk -g staff -m 644 lg4/lg4.c lg4/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/lg4' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/lg4/data' /usr/bin/install -c -o pbulk -g staff -m 644 lg4/data/example.fas lg4/data/example.tree '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/lg4/data' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/load-utree' /usr/bin/install -c -o pbulk -g staff -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/load-utree' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/install -c -o pbulk -g staff -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newick-fasta-rooted' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/install -c -o pbulk -g staff -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newick-fasta-unrooted' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/install -c -o pbulk -g staff -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newick-phylip-unrooted' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newton' /usr/bin/install -c -o pbulk -g staff -m 644 newton/newton.c newton/Makefile newton/README.md '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/newton' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/parsimony' /usr/bin/install -c -o pbulk -g staff -m 644 parsimony/npr-pars.c parsimony/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/parsimony' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/partial-traversal' /usr/bin/install -c -o pbulk -g staff -m 644 partial-traversal/partial.c partial-traversal/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/partial-traversal' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/protein-list' /usr/bin/install -c -o pbulk -g staff -m 644 protein-list/protein-list.c protein-list/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/protein-list' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/rooted' /usr/bin/install -c -o pbulk -g staff -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/rooted' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/rooted-tacg' /usr/bin/install -c -o pbulk -g staff -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/rooted-tacg' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/stepwise' /usr/bin/install -c -o pbulk -g staff -m 644 stepwise/stepwise.c stepwise/Makefile '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/stepwise' .././install-sh -c -d '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/unrooted' /usr/bin/install -c -o pbulk -g staff -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/examples/unrooted' /opt/pkg/bin/mksh ./config.status --recheck => Automatic manual page handling => Generating post-install file lists pkg_create: can't stat `/Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/libpll_manual.pdf' => Checking file-check results for libpll-0.3.2 ERROR: ************************************************************ ERROR: The following files are in the PLIST but not in /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg: ERROR: /Users/pbulk/build/biology/libpll/work/.destdir/opt/pkg/share/doc/libpll/libpll_manual.pdf *** Error code 1 Stop. bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-x86_64/biology/libpll *** Error code 1 Stop. bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-x86_64/biology/libpll