=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.0nb1 if test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10585 all_p; \ else \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10585 all_r; \ fi gmake[1]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build' gmake[1]: warning: -j3 forced in submake: resetting jobserver mode. Build session ID: 4B1F8BBB-75A0-41D3-A246-BD80A60A315A /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/gui/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/ctools/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/gui/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sample/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/internal/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ctools/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gui/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/internal/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sample/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/jaeger/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11326 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11326 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11326 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11326 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11326 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_strings.c. 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A ncbicfg.c -o ncbicfg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp:3748:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiapp_api.hpp:395:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp:226:25: warning: 'NSLookupSymbolInModule' is deprecated: first deprecated in macOS 10.5 - dlsym() [-Wdeprecated-declarations] NSSymbol nssymbol = NSLookupSymbolInModule(module, name.c_str()); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/mach-o/dyld.h:200:17: note: 'NSLookupSymbolInModule' has been explicitly marked deprecated here extern NSSymbol NSLookupSymbolInModule(NSModule module, const char* symbolName) __API_UNAVAILABLE(ios, tvos, watchos) DYLD_DRIVERKIT_UNAVAILABLE __OSX_DEPRECATED(10.1, 10.5, "dlsym()"); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp:228:11: warning: 'NSAddressOfSymbol' is deprecated: first deprecated in macOS 10.5 - dlsym() [-Wdeprecated-declarations] ptr = NSAddressOfSymbol(nssymbol); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/mach-o/dyld.h:207:21: note: 'NSAddressOfSymbol' has been explicitly marked deprecated here extern void * NSAddressOfSymbol(NSSymbol symbol) __API_UNAVAILABLE(ios, tvos, watchos) DYLD_DRIVERKIT_UNAVAILABLE __OSX_DEPRECATED(10.1, 10.5, "dlsym()"); ^ 2 warnings generated. /ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-regis2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbifile.cpp:5160:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ ter -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp:4914:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return ParseEscapes(s_Unquote(move(str), n_read)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp:4982:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return s_ParseJsonEncodeEscapes(s_Unquote(move(str), n_read)); ^ std:: 2 warnings generated. /ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -WaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbitime.cpp:32: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbitime.hpp:1926:13: warning: private field 'm_Daylight' is not used [-Wunused-private-field] int m_Daylight; ///< Cached system daylight information ^ 1 warning generated. ll -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/syslog.cpp -o syslog.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_control.cpp -o request_control.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/expr.cpp -o expr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/expr.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/expr.hpp:369:17: warning: private field 'm_TmpVarCount' is not used [-Wunused-private-field] int m_TmpVarCount; ^ 1 warning generated. /work/ncbi-blast-2.14.0+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/guard.cpp -o guard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_status.cpp -o request_status.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/R/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxncbi.a(ncbiatomic.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxncbi.a(ncbiatomic.o) has no symbols eleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11326 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11304 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11304 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/image/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/qparse/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/diff/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/demo/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT diff/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT image/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/qparse/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/random_gen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/strsearch.cpp -o strsearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/logrotate.cpp -o logrotate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/i/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp:2828:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] return x_IsTruncatedJsonNumber(testString) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp:2828:12: note: cast one or both operands to int to silence this warning 1 warning generated. nclude/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp -o format_guess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ascii85.cpp -o ascii85.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/md5.cpp -o md5.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/unicode.cpp -o unicode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary_util.cpp:730:20: warning: unused function 's_ReplaceEnding' [-Wunused-function] static inline bool s_ReplaceEnding(string& word, ^ 1 warning generated. 1 warning generated. last+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary.cpp -o dictionary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o 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-fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/uttp.cpp -o uttp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multi_writer.cpp -o multi_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/itransaction.cpp -o itransaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/scheduler.cpp -o scheduler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/distribution.cpp -o distribution.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/rangelist.cpp -o rangelist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/util_misc.cpp -o util_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/table_printer.cpp -o table_printer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/stream_source.cpp -o stream_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/cache_async.cpp -o cache_async.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/w/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/cache_async.cpp:283:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return new SDeferredWriter(m_ThreadPool, m_Writer, move(meta)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:33: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:107:105: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXTerm(unique_ptr& x, unsigned int min, unsigned int max, bool lazy = false) : m_RegX(move(x)), m_Min(min), m_Max(max), m_Lazy(lazy) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:121:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXConcat(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:132:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXSelect(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:154:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXAssert(EAssert a, unique_ptr& x) : m_Assert(a), m_RegX(move(x)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:318:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:328:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:338:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:349:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:359:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1183:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w.push_back(move(p)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1188:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w[i]->Merge(move(w[j])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1192:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Merge(move(w[0])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1203:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_States.push_back(move(state)); ^ std:: 1 warning generated. 13 warnings generated. ork/ncbi-blast-2.14.0+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/regexp TMPL=regexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23075 mark-as-disabled gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23213 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23213 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23213 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23213 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23213 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23213 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C bzip2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24858 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24898 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24858 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/zlib TMPL=zlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24987 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24858 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25059 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25059 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25059 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_zip.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/diff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/image' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26862 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26862 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26862 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26862 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27605 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27605 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27605 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build/biol1 warning generated. ogy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28487 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28487 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29122 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29122 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/demo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17919 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29696 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29696 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29696 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ext/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/daemons/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/daemons/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ext/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT daemons/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ext/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/ext/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/platform_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/poly1305.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_aead.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_client.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_mac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_hash.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_se.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_crypto_storage.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/psa_its_file.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/rsa_internal.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509_csr.c. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_msg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information Updating for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_tls.c. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aria.c -o mbedtls/aria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFIL/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/bignum.c:1391:29: warning: variable 't' set but not used [-Wunused-but-set-variable] mbedtls_mpi_uint c = 0, t = 0; ^ 1 warning generated. E_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chacha20.c -o mbedtls/chacha20.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chachapoly.c -o mbedtls/chachapoly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/constant_time.c -o mbedtls/constant_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/nc/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ssl_tls13_keys.o) has no symbols bi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbsmd_stub.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbdns.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:2982:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:3019:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:2982:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:2973:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 1 warning generated. D=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 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-D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:41: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:471:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream(move(stream)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:514:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_StatusText = move(status_text); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:791:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:791:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:925:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream = move(stream); ^ std:: DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -9 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_usage_report.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp:129:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CServiceDiscovery::TServer server(move(address), 1.0); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp:130:64: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return make_shared(1, move(server)); ^ std:: 4 warnings generated. 6 warnings generated. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ssl_tls13_keys.o) has no symbols fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30291 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1203:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1203:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connection_pool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30271 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp. Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-srIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_client_factory.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/ns_client_factory.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp:595:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Masters.insert(move(address)); ^ std:: 5 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 6 warnings generated. 4 warnings generated. 5 warnings generated. c/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-stringIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. 5 warnings generated. s -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp:85:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Writer = move(writer); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:315:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Address(move(address)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:317:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ThrottleStats(move(throttle_params)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:368:14: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] rv = move(args.GetArgs()); ^ std:: 5 warnings generated. 4 warnings generated. 8 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:398:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Construct(m_ServerPool->FindOrCreateServerImpl(move(address))); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:746:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Impl->m_EnforcedServer = move(address); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:806:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = new SNetServerInPool(move(server_address), m_PropCreator(), m_ThrottleParams); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:826:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = FindOrCreateServerImpl(m_EnforcedServer.host == 0 ? move(server_address) : m_EnforcedServer); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:835:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return m_ServerPool->GetServer(this, move(server_address)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_params.cpp:87:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto result = m_SubConfigs.emplace(section, move(sub_config)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 10 warnings generated. -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD1 warning generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. _SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. ervices/netschedule_key.cpp -o netschedule_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. 5 warnings generated. kg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/util.cpp -o util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/clparser.cpp -o clparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp:1052:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp:1052:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/impl/netstorage_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 2 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SE4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. SSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39296 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39268 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30271 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/ext' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30271 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/test' /opt/pkg/bin/gmake -C daemons -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30271 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47447 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47447 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47447 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47447 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47447 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/user_agent.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47447 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47416 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51262 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51262 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51262 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/page.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/pager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/writer_htmlenc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51262 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51262 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/demo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C helpers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53518 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53518 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53696 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53696 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53696 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57739 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/soap/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT soap/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57851 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57851 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57851 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57851 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57851 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/iIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectio.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectio.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. nclude -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 19 warnings generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typemap.cpp -o typemap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp -o continfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberlist.cpp:298:26: warning: unused variable 'id' [-Wunused-variable] const CMemberId& id = info->GetId(); ^ deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp -o stltypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberid.cpp -o memberid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberlist.cpp -o memberlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/item.cpp -o item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp -o classinfob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/nc1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/member.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/member.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/choiceptr.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/choiceptr.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. bi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/member.cpp -o member.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp -o classinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp -o choice.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objcopy.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objcopy.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp -o objistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp -o objostr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp -o objcopy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp -o iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp -o serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. .14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp -o pack_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp -o exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp -o objhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objlist.cpp -o objlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objstack.cpp -o objstack.o /Users/pbulk/build/biology/ncbi-blast+/work/.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythonIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrxml.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrxml.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serializable.cpp -o serializable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp -o serialobject.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/p2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/rpcbase_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/rpcbase_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pathhook.cpp -o pathhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57851 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols warning: /Library/Developer/CommandLineTools/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/asntypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialasn.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57828 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64953 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64953 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 4 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/type.cpp -o type.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. -blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool 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-DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57828 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57828 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57828 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68887 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68887 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68887 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69306 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69462 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69462 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69462 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69306 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/lang_bind/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/simple/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lang_bind/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT simple/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/simple/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rw_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/w/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ ork/ncbi-blast-2.14.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-c1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ommon -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/samples/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ctlib/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ftds-default/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT mysql/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f .dbapi_driver.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76660 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72799 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70102 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76848 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877"; export MAKE; \ ( cd $i && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. + \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biogmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. tree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/Releasegmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. MT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. +/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd megmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. dline.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Usgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /work/ncbi-blast-2.14.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/sgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. eqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremagmake[5]: warning: -j3 forced in submake: resetting jobserver mode. t' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/gegmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. neral.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ buigmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. lddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbigmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. -blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 0+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2.14.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. +-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/bgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. iology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/srgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. c/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/bugmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ild/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m trackmgr.asn -M "obWarning: (810.1) No service name provided for CTrackMgrClient gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. jects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/buildgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76877 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh general all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80614 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80614 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80614 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80614 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635: unsigned block_idx = 0; ^ 13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80614 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80614 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh biblio all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81548 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81548 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81548 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81548 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh medline all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82055 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82055 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82055 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82055 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pub all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82516 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82516 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82516 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82516 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqcode all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83049 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83049 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83049 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83049 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83758 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83780 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83480 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83480 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83480 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83480 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqblock___.cpp. Updating Updating dependency information for seqloc___.cpp. dependency information for seqfeat___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biologIn file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqblock__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqblock__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp:15: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Linkage_evidence.cpp:97:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] temp_vector.push_back(move(new_evid)); ^ std:: In file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1919:21: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ In file included from seqfeat__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqfeat__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1728:42: warning: overlapping comparisons always evaluate to true [-Wtautological-overlap-compare] if ( type != CSeq_loc::e_Pnt || type != CSeq_loc::e_Int ) { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 3 warnings generated. In file included from seqres__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqres__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. y/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqalign__.cpp -o seqalign__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqblock__.cpp -o seqblock__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqfeat__.cpp -o seqfeat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqloc__.cpp -o seqloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqres__.cpp -o seqres__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REIn file included from seqtable__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqtable__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from seqalign___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqalign___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqblock___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqblock___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqtable__.cpp -o seqtable__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqalign___.cpp -o seqalign___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqblock___.cpp -o seqblock___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqfeat___.cpp -o seqfeat___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/wo2 warnings generated. In file included from seqfeat___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqfeat___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqloc___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqloc___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqres___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqres___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seqport_util.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_data.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seqport_util.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_data.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqtable___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from seqtable___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. rk/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqloc___.cpp -o seqloc___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqres___.cpp -o seqres___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A seqtable___.cpp -o seqtable___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:469:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:792:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:866:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:469:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:792:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:866:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:1877:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:2416:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:469:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:792:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:866:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 7 warnings generated. ++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-regIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_from_string.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_from_string.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. ister -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83480 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83480 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqset all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86884 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86884 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86884 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86884 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/gb_release_file.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/gb_release_file.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86884 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh submit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87549 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87549 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87549 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87549 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqedit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88239 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88239 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88239 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88239 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqsplit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89021 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89021 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89021 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89021 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency Updating dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh id1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90107 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90083 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh id2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] replies = move(ProcessSomeRequests(packet)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 4 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91357 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh entrez2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93040 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93018 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pubmed all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94590 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94590 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94590 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94590 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh medlars all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95265 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95265 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95265 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95265 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh mla all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95811 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh proj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96884 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96884 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96884 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96884 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh scoremat all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97731 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97731 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97731 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97731 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blast all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/names.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/NCBI_Blast4_module.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/names.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/NCBI_Blast4_module.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98838 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blastdb all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1771 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1771 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1771 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1771 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blastxml all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3207 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3207 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3207 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3207 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4365 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4365 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4365 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4365 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5584 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' /opt/gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5558 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5558 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5558 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from mmdb2__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from mmdb3__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from mmdb1__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from mmdb2__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb1__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb3__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/buil2 warnings generated. In file included from mmdb1___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from mmdb2___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from mmdb1___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb2___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb3___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from mmdb3___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. d/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh cn3d all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7716 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7716 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7716 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7716 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh cdd all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9248 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9248 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9248 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9248 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh ncbimime all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10837 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10837 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10837 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10837 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10837 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12486 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12486 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12486 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12486 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pcassay all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14255 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14255 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14255 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14255 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15801 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15801 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15801 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15801 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh gbseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17488 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17488 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17488 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17488 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh insdseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19146 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19146 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19146 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19146 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh tinyseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20643 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20643 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20643 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20643 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh biotree all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21919 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21919 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21919 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21919 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh entrezgene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23309 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23309 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23309 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23309 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const std::__list_const_iterator, void *>::value_type' (aka 'const ncbi::CRef') [-Wrange-loop-construct] for ( const auto root_comment : GetComments() ) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const std::__list_const_iterator, void *>::value_type &' (aka 'const ncbi::CRef &') to prevent copying for ( const auto root_comment : GetComments() ) { ^~~~~~~~~~~~~~~~~~~~~~~~~ & In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23309 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh omssa all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25332 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25332 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25332 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25332 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh remap all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27030 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqtest all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29790 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29790 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29790 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29790 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh taxon1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++1In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. 7 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30838 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh taxon3 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34302 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34302 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34302 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34302 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh gbproj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35353 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35353 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35353 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35353 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/DummyObsoleteType_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType_.hpp:131:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/DummyObsoleteType.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType_.hpp:131:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 4 warnings generated. 3 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh trackmgr all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from 39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: : In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hppIn file included from :/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp37:: 36In file included from : /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hppIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: :36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || :/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:381635:13: note: cast one or both operands to int to silence this warning : In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36539 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/blast_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/blast_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : TBaseClient(move(c)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:84:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_svc(move(c.m_Http_svc)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:85:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_session(move(c.m_Http_session)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:86:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Rpc_client(move(c.m_Rpc_client)) ^ std:: 7 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:452:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:11: note: in instantiation of member function 'ncbi::CGridRPCBaseClient::CGridRPCBaseClient' requested here : TBaseClient(move(c)), ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:452:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: 7 warnings generated. 17 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ 7 warnings generated. 7 warnings generated. +/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/7 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ 7 warnings generated. 7 warnings generated. 7 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ 7 warnings generated. 7 warnings generated. 7 warnings generated. objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh valerr all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41721 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41721 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41721 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41721 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh valid all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo42617 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo42617 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo42617 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo42617 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/Comment_rule.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/Comment_rule.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh access all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43814 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43814 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43814 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43814 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh docsum all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44510 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44510 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44510 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44510 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh featdef all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45309 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45309 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45309 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45309 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh genome_collection all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 45958 (make_asn) gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45856 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build/biolo3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assembly_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assembly_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'std::basic_string::size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 2 warnings generated. 3 warnings generated. gy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45842 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47614 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47614 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh homologene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48158 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48158 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48158 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48158 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh mim all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48788 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48788 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48788 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48788 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh objprt all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo49453 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo49453 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo49453 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo49453 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh variation all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50058 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50058 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50058 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50058 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh macro all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51111 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51111 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51111 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51111 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:11: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Apply_table_extra_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data_.hpp:126:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:6: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Add_file_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data_.hpp:126:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Feat_qual_choice.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Feat_qual_choice.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_format_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action_.hpp:141:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:66: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_sets_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action_.hpp:136:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:8: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Apply_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Field_type.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:115: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Pub_field_speci_const_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type_.hpp:146:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_format_action_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action_.hpp:141:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:66: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_sets_action_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action_.hpp:136:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:115: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Pub_field_speci_const_type_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type_.hpp:146:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ 13 warnings generated. 13 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51111 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52715 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52715 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52715 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52715 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh objcoords all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53377 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53377 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53377 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53377 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh varrep all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53891 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53891 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53891 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53891 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/NtSite.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite_.hpp:320:9: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp:17: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/NtIntLimit_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite_.hpp:320:9: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ 3 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55057 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55117 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55155 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.0 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55155 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55155 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55155 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55117 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55721 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.0 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55721 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55721 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55721 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76834 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C primary_track -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56069 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56086 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56086 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56086 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56086 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56086 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56565 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56565 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56565 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for Updating dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_setters.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_setters.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp: unsigned block_idx = 0; ^ 46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/feat_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/feat_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-st2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. rings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp -o data_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp -o priority.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/prefetch_actions.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning iology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp -o scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/prefetch_actions.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/heap_scope.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/heap_scope.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. +-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_annot_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_annot_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/align_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/align_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. st+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. lang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/includIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_type_index.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_type_index.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. e/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-4In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp:3694:17: warning: variable 'index' set but not used [-Wunused-but-set-variable] TSeqPos index = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader_factory.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader_factory.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_graph_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Seq_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Seq_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_graph_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Seq_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Seq_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 1D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wa2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_align_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_align_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. ll -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythonIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/incl2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edits_db_saver.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edits_db_saver.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ude -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56565 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/test' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56565 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60250 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60250 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60250 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depreIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/create_defline.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/MolInfo.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/MolInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/create_defline.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/MolInfo.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/MolInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. cated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp:308:56: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/obj_sniff.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/obj_sniff.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp:1712:52: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build/biology/ncbi-2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ 2 warnings generated. 2 warnings generated. blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-registerIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ : In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60250 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56565 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61513 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61513 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61513 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_exceptions.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp:334:12: warning: variable 'row' set but not used [-Wunused-but-set-variable] size_t row = 0; ^ 3 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/annot_piece.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/annot_piece.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/chunk_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/place_id.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/chunk_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/place_id.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. cpp -o object_splitinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/unit_test_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cddalignview/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/lds2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/unit_test_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/manip/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/validator/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/validator/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/manip/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/asniotest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/snputil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/asniotest/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/snputil/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/uudutil/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/variation/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/writers/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/variation/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/uudutil/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/writers/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/import/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/flatfile/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test_util/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/import/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/flatfile/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lds2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT manip/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/manip/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT asniotest/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT uudutil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT variation/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/variation/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT import/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63812 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63812 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63812 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/listener.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/app/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT app/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64074 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64074 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64074 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64074 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64074 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/line_error.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. er_message_handler.cpp -o reader_message_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_read.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_read.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. kg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:513:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] ids = move(data.ids); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:517:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:574:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_CurrentSeqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:1493:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] vecLinkEvids.push_back(move(pNewLinkEvid)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:1498:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] delta_ext.Set().push_back(move(gap_ds)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:1522:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().emplace_back(move(pDesc)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:2045:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 9 warnings generated. -blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp:859:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 3 warnings generated. t+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -WnoIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. -format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OF2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/getfeature.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/featuredump.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/getfeature.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/featuredump.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:133:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] titles = move(data.titles); ^ std:: 2 warnings generated. 3 warnings generated. FSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp:783:12: warning: variable 'record_counter' set but not used [-Wunused-but-set-variable] size_t record_counter = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Annotdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Annotdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Annotdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Annotdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 3 warnings generated. 2 warnings generated. /work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /Users/pbulk/build/bioloIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/so_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/so_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-reIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gister -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/bed_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/bed_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. aseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/wor2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta_exception.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta_exception.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. k/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -W2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:308:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SaveMods(move(accepted_mods), handle_existing, m_Mods); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:333:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:336:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:346:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:352:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:684:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seq_inst.SetHist().SetReplaces().SetIds() = move(secondary_ids); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:292:17: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here CModData( mod.GetName(), kEmptyStr); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:513:30: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here fPostMessage(CModData( canonicalName, kEmptyStr), e.GetMsg(), eDiag_Error, eModSubcode_Undefined); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:526:22: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here fPostMessage(CModData("",""), msg, eDiag_Info, eModSubcode_Applied); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1684:31: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here ::new((void*)__p) _Up(_VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1562:21: note: in instantiation of function template specialization 'std::allocator>::construct' requested here __a.construct(__p, _VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1413:14: note: in instantiation of function template specialization 'std::allocator_traits>>::__construct' requested here {__construct(__has_construct(), ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/list:1682:26: note: in instantiation of function template specialization 'std::allocator_traits>>::construct' requested here __node_alloc_traits::construct(__na, _VSTD::addressof(__hold->__value_), _VSTD::forward<_Args>(__args)...); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:760:22: note: in instantiation of function template specialization 'std::list::emplace_back' requested here mods.emplace_back(name, value); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:324:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetSubtype().push_back(move(pSubSource)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:348:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:373:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:424:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:446:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:482:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:515:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:594:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dbtags.push_back(move(pDbtag)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:661:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetOrgMods().push_back(move(pOrgMod)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:818:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pField->SetData().SetFields().push_back(move(pSubfield)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:941:34: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] .push_back(move(pPub)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:133:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetName() = move(names); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:143:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetEc() = move(ec_numbers); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:153:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetActivity() = move(activity); ^ std:: 16 warnings generated. 5 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 14 warnings generated. no-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pk2 warnings generated. 2 warnings generated. g/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64074 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/nc2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. bi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64064 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64064 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64064 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72587 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72844 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72844 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72844 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_IDIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2459:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ 2 warnings generated. =4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bla2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. 2 warnings generated. st-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -stIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. 2 warnings generated. d=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72844 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75038 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75038 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 3 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72844 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75631 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75631 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72587 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76505 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76505 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76505 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1354:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:304:9: warning: variable 'index' set but not used [-Wunused-but-set-variable] int index = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/b3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. iology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/seqloc__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/seqloc__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. rc/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76505 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72587 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78736 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78736 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78736 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78736 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79064 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79064 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78736 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72587 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72587 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79292 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79292 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79292 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79292 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72587 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79656 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79656 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79656 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79656 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT diag/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cassandra/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /opt/pkg/bin/gmake -C diag -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81142 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag' /opt/pkg/bin/gmake -C cassandra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81142 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81142 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82081 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82081 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82081 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82081 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81142 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81142 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT asn_cache/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lds2/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT patcher/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cdd/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /opt/pkg/bin/gmake -C genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82826 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubseq/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83721 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83721 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83721 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83721 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83721 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/incluIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. de/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. L -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/incl2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:390:12: warning: variable 'unused_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:390:30: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ 4 warnings generated. ude -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.dylib .libncbi_xreader-dll.dylib.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader-dll.dylib -o libncbi_xreader-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.dylib /bin/ln -f .ncbi_xreader-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83721 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /Users/pbulk/build/biology/ncbi2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. -blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.dylib .libncbi_xloader_genbank-dll.dylib.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank-dll.dylib -o libncbi_xloader_genbank-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.dylib /bin/ln -f .ncbi_xloader_genbank.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/ln -f .ncbi_xloader_genbank-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89115 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89115 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89115 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.dylib .libncbi_xreader_cache-dll.dylib.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_cache-dll.dylib -o libncbi_xreader_cache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_cache.o writer_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.dylib /bin/ln -f .ncbi_xreader_cache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/ln -f .ncbi_xreader_cache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -C pubseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /opt/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90182 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90182 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90182 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.dylib .libncbi_xreader_id2-dll.dylib.stamp ar cr libncbi_xreader_id2.a reader_id2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id2-dll.dylib -o libncbi_xreader_id2-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id2.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.dylib /bin/ln -f .ncbi_xreader_id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/ln -f .ncbi_xreader_id2-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90992 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90992 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90992 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.dylib .libncbi_xreader_id1-dll.dylib.stamp ar cr libncbi_xreader_id1.a reader_id1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1-dll.dylib -o libncbi_xreader_id1-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id1.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f .ncbi_xreader_id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.dylib /bin/ln -f .ncbi_xreader_id1-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -C pubseq2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /opt/pkg/bin/gmake -C gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92164 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92164 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92164 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.dylib .libncbi_xreader_gicache-dll.dylib.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_gicache-dll.dylib -o libncbi_xreader_gicache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_gicache.o gicache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.dylib /bin/ln -f .ncbi_xreader_gicache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/ln -f .ncbi_xreader_gicache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83700 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82826 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82826 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92994 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92994 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92994 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92994 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92994 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); ^ 3 warnings generated. 2 warnings generated. 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92994 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92988 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C patcher -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82826 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /opt/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82826 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /opt/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82826 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /opt/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94957 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94957 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94957 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -C alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95649 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95649 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95649 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:252:16: warning: variable 'seg' set but not used [-Wunused-but-set-variable] size_t seg = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning match1->m_ChainScore == match2->m_ChainScore && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning (aln_seq1->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq1->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning aln_seq1->m_StrandScore < 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore < 0 && ^ ( 2 warnings generated. 2 warnings generated. 7 warnings generated. -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning if (plus && prev_start_plus_len < start || ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] !plus && start_plus_len < (TSeqPos) prev_start) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning !plus && start_plus_len < (TSeqPos) prev_start) { ^ ( ) 4 warnings generated. 2 warnings generated. bi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/sr2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) 2 warnings generated. 4 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. c/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/p2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ython3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95649 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95649 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C cddalignview -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cddalignview' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/test' /opt/pkg/bin/gmake -C manip -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/manip' /opt/pkg/bin/gmake -C eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/linkout/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT linkout/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /opt/pkg/bin/gmake -C egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File egquery.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1277 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1277 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1277 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1277 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -C elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File elink.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2396 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2396 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2396 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2396 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -C epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File epost.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3484 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3484 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3484 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3484 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -C esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esearch.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4363 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4363 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4363 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4363 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -C espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File espell.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4979 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4979 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4979 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4979 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -C esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esummary.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6015 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6015 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6015 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6015 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -C linkout -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /opt/pkg/bin/gmake -C einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File einfo.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7060 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7060 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7060 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7060 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -C uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File uilist.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8045 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8045 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8045 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8045 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -C ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8898 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8898 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8898 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8898 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -C efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File efetch.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9865 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9865 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9865 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9865 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:486:81: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] if (!affiliation.empty()) affiliations.emplace_back(move(affiliation)); ^ std:: 3 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo899 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18748 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18748 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18748 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/einfo.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/efetch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/einfo.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/efetch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/esearch.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/egquery.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/esearch.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/egquery.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/epost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/epost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. -common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/elink.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/esummary.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/esummary.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/elink.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/espell.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/espell.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. ology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils' /opt/pkg/bin/gmake -C edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubmed_citmatch/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] CCdregion_translate::TranslateCdregion(data, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:965:5: note: 'TranslateCdregion' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. 2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: unused variable 'cds_range' [-Wunused-variable] auto cds_range = copy_feat->GetLocation().GetTotalRange(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] switch (seqmap_ci.GetType()) { ^~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: note: add missing switch cases switch (seqmap_ci.GetType()) { ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/string_constraint.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/string_constraint.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/cds_fix.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/cds_fix.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. apper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSETIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/loc_edit.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/loc_edit.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/mail_report.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/Seq_table.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/Seq_table_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/mail_report.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/Seq_table.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/Seq_table_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] TSeqPos current = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:396:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] gap.SetSeq_data().SetGap().SetLinkage_evidence().emplace_back(move(pEvidence)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/source_edit.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/source_edit.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. _BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/mla_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/mla_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:360:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, desc); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/remote_updater.hpp:115:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeqdesc& obj); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:605:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/remote_updater.hpp:113:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeq_entry& entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/eutils_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/eutils_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 4 warnings generated. -src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp -o mla_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /Users/pbulk/build/biology/ncbi-bl2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/gap_trim.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/gap_trim.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Cdregion.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Cdregion_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Cdregion.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Cdregion_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. ast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGE/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp:385:17: warning: lambda capture 'context' is not used [-Wunused-lambda-capture] [this, &context](CObjectIStream& in, const CObjectTypeInfo& type) ~~~^~~~~~~ 2 warnings generated. 2 warnings generated. 3 warnings generated. FILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/buiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_macro_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_loader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_macro_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_loader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. ld/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o mla_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /opt/pkg/bin/gmake -C pubmed_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /opt/pkg/bin/gmake -C pubmed_citmatch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /opt/pkg/bin/gmake -C test_remote_updater -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20583 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29737 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29737 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29737 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | : ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || 36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:note: cast one or both operands to int to silence this warning 43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] int m_Dummy; ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blastIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp::163534:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp13::38 : warning: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.huse of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]: 44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pXref->GetId().IsLocal() & ^~~~~~~~~~~~~~~~~~~~~~~~~~ && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: note: cast one or both operands to int to silence this warning 2 warnings generated. 3 warnings generated. -2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/workIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/cleanup/huge_file_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/cleanup/huge_file_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. /ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29737 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34753 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34753 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34753 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information Updating for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/context.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Delta_ext.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Delta_ext_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Delta_ext.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Delta_ext_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/PIR_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/PIR_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/PIR_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/PIR_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. bi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /Users/pbulk/bu2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ild/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/GB_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/GB_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/GB_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/GB_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biol/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/context.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/context.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: unused function 's_NsAreGaps' [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. ogy/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/context.cpp -o context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_form2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Cit_book.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Cit_book_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Cit_book.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Cit_book_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/format_item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/format_item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. atter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: unused function 's_get_anchor_html' [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/ostream_text_ostream.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/ostream_text_ostream.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/accession_item.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/accession_item.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/gap_item.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/gap_item.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /U2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/gather_iter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/gather_iter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/OrgMod.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/OrgMod_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/OrgMod.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/OrgMod_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -C validator -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/validator' /opt/pkg/bin/gmake -C asniotest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/asniotest' /opt/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align' /opt/pkg/bin/gmake -C seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44927 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44927 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44927 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. YPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44927 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46801 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46801 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46801 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp:1574:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp:1239:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] size_t line_length = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp:4138:28: warning: unused variable 'subject_seqid' [-Wunused-variable] const CSeq_id& subject_seqid = m_AV->GetSeqId(1); ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] const CSeq_align& da = *x_OrigAlignsById[*di]; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 2 warnings generated. pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46801 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C snputil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/snputil' /opt/pkg/bin/gmake -C uudutil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/uudutil' /opt/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/variation' /opt/pkg/bin/gmake -C writers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/writers' /opt/pkg/bin/gmake -C import -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/import' /opt/pkg/bin/gmake -C flatfile -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62165 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools' /opt/pkg/bin/gmake -C ctools -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/ctools' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/ctools' /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50953 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50962 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sra/readers/sra TMPL=sraread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50968 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sra/readers/sra TMPL=srareadx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50968 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50962 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sra/readers/bam TMPL=bamread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51143 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50953 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51242 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51253 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51242 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51296 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C csra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51242 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51342 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C wgs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51242 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /opt/pkg/bin/gmake -C vdbgraph -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51242 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51419 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C snp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51242 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51458 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C algo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/structure/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/sequence/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/structure/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/gnomon/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/gnomon/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/seqqa/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/tree/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/phy_tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/text/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/seqqa/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/volume_merge/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/cobalt/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/text/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/primer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/volume_merge/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/id_mapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/primer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT sequence/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/id_mapper/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/sequence/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/structure/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gnomon/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/gnomon/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT seqqa/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/seqqa/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT volume_merge/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT primer/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/primer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /opt/pkg/bin/gmake -C dustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53997 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53997 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53997 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -C winmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55016 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55016 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55016 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency inIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. formation for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UserIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] bool ambig; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ s/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. p -o seq_masker_ostat_opt_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-fIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/win_mask_config.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/win_mask_config.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. ormat-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/in3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. clude -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -C sequence -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/sequence' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT dbindex_search/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT blast_sra_input/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /opt/pkg/bin/gmake -C composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59713 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59713 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59713 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] double corr_factor = 0.0; /* correlation between how p_query ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pk2 warnings generated. g/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -C core -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60249 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60249 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60249 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/aa_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_program.c. Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_tune.c. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_dynarray.c. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/spliced_hits.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEB/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /Users/pbulk/build/2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFF2 warnings generated. SET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 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-I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cw/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. 1 warning generated. rapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -C dbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61798 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61798 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61798 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ 2 warnings generated. 3 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /Users/pbulk/build/biology/nc3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/dbindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/dbindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] unsigned long word_size_; /**< Target word size. */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. 3 warnings generated. bi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61798 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63087 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63087 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o mkindex_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makembindex strip makembindex /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C dbindex_search -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63611 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63611 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63611 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information Updating for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for .core_aa_ungapped.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_psi.c. Updating Updating dependency dependency information information for for .core_na_ungapped.c. .core_blast_psi_priv.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_pattern.c. Updating dependency information for Updating .core_phi_extend.c. dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_spliced_hits.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. rc/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /Users/pbu2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:530:17: warning: variable 'subject_pos' set but not used [-Wunused-but-set-variable] int subject_pos = hh->hsp->subject.offset; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:462:9: warning: variable 'num_hsps' set but not used [-Wunused-but-set-variable] int num_hsps = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 4 warnings generated. 4 warnings generated. lk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -W2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. no-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] Int2 rv = BlastProgram2Number(program.c_str(), &retval); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] int l_total_bytes=0, n_read; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. _OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. bi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/nIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] reader.Read(false, true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. cbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /Users/pbulk2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. /build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-striIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ngs -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DND2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. EBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqConvert::Convert(m_SequenceData, m_Encoding, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqManip::ReverseComplement(m_SequenceData, ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. -blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:821:9: warning: variable 'db_seq_length' set but not used [-Wunused-but-set-variable] int db_seq_length = db_seq_offsets[db_oid + 1] - db_seq_offsets[db_oid]; ^ 2 warnings generated. 2 warnings generated. +/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ ++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_aa_ungapped.c -o .core_aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_diagnostics.c -o .core_blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-regi4 warnings generated. ster -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_engine.c -o .core_blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_extend.c -o .core_blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_filter.c -o .core_blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_gapalign.c -o .core_blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_hits.c -o .core_blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_hspstream.c -o .core_blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msseIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] int m_QueryIndex; ^ In file included from .core_blast_kappa.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. 4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_itree.c -o .core_blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_kappa.c -o .core_blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_lookup.c -o .core_blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_aalookup.c -o .core_blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_aascan.c -o .core_blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=43 warnings generated. B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_nalookup.c -o .core_blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_nascan.c -o .core_blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_message.c -o .core_blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_options.c -o .core_blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_psi.c -o .core_blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_na_ungapped.c -o .core_na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/wIn file included from .core_blast_psi_priv.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. In file included from .core_blast_stat.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ ork/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_psi_priv.c -o .core_blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_seg.c -o .core_blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_seqsrc.c -o .core_blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_setup.c -o .core_blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_stat.c -o .core_blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_traceback.c -o .core_blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -mIn file included from .core_blast_traceback.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. 2 warnings generated. 64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_util.c -o .core_blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_gapinfo.c -o .core_gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_greedy_align.c -o .core_greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_hspfilter_collector.c -o .core_hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_hspfilter_culling.c -o .core_hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_link_hsps.c -o .core_link_hsps.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_lookup_util.c -o .core_lookup_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_lookup_wrap.c -o .core_lookup_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_ncbi_std.c -o .core_ncbi_std.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_ncbi_math.c -o .core_ncbi_math.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_encoding.c -o .core_blast_encoding.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_pattern.c -o .core_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_phi_lookup.c -o .core_phi_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_parameters.c -o .core_blast_parameters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc 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-Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_query_info.c -o .core_blast_query_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_tune.c -o .core_blast_tune.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_sw.c -o .core_blast_sw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_dynarray.c -o .core_blast_dynarray.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_split_query.c -o .core_split_query.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_gencode_singleton.c -o .core_gencode_singleton.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_index_ungapped.c -o .core_index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -WnoIn file included from .core_jumper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ In file included from .core_hspfilter_mapper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. 1 warning generated. -deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_boost_erf.c -o .core_boost_erf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_jumper.c -o .core_jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_engine.c .core_blast_seqsrc.c .core_ncbi_math.c .core_index_ungapped.c .core_blast_filter.c .core_lookup_wrap.c .core_blast_psi.c .core_gapinfo.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_hspstream_mt_utils.c .core_blast_diagnostics.c .core_blast_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_encoding.c .core_blast_psi_priv.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_ncbi_std.c .core_blast_program.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_query_info.c .core_blast_gapalign.c .core_blast_seg.c .core_blast_sw.c .core_split_query.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -C proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75133 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75133 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75133 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: 37/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: :13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635::13: note: cast one or both operands to int to silence this warning 57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:652:6: warning: variable 'hashCount' set but not used [-Wunused-but-set-variable] int hashCount=0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:737:6: warning: variable 'lsh_hits' set but not used [-Wunused-but-set-variable] int lsh_hits=0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75133 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76157 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76157 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76157 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -std4 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:49: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:51: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 8 warnings generated. lib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/sam_formatter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/sam_formatter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 6 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -C blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78389 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78389 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78389 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ last_input.cpp -o blast_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clangIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. ++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARG2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] const bool kFilterByDefault = false; ^ 3 warnings generated. 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] const int kMaxValue = static_cast(GetCpuCount()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here inline NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78389 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78389 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C blast_sra_input -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /opt/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81221 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81221 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81221 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp:199:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 3 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -C gumbel_params -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /opt/pkg/bin/gmake -C vdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82397 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -C unit_tests -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59183 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C blast_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82451 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82451 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /opt/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82451 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82451 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82548 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82548 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast' /opt/pkg/bin/gmake -C segmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82674 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82674 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82674 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/align' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/align' /opt/pkg/bin/gmake -C structure -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/structure' /opt/pkg/bin/gmake -C gnomon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/gnomon' /opt/pkg/bin/gmake -C tree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/tree' /opt/pkg/bin/gmake -C phy_tree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/phy_tree' /opt/pkg/bin/gmake -C seqqa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/seqqa' /opt/pkg/bin/gmake -C cobalt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/cobalt' /opt/pkg/bin/gmake -C text -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/text' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/text' /opt/pkg/bin/gmake -C volume_merge -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/volume_merge' /opt/pkg/bin/gmake -C primer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/primer' /opt/pkg/bin/gmake -C id_mapper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51502 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo' /opt/pkg/bin/gmake -C misc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/grid_cgi/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/clog/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlwrapp/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/grid_cgi/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/eutils_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hydra_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/discrepancy/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/eutils_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hydra_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/discrepancy/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hgvs/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlreaders/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/biosample_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hgvs/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/netstorage/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/biosample_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/data_loaders_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/lapackwrapp/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/data_loaders_util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/lapackwrapp/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/pmcidconv_client/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/cgi_redirect/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT clog/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT grid_cgi/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/cgi_redirect/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT eutils_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT hydra_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT xmlreaders/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT hgvs/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT biosample_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT data_loaders_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pmcidconv_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /opt/pkg/bin/gmake -C third_party -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party' /opt/pkg/bin/gmake -C third_party_static -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' /opt/pkg/bin/gmake -C clog -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/clog' /opt/pkg/bin/gmake -C grid_cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/grid_cgi' /opt/pkg/bin/gmake -C xmlwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' /opt/pkg/bin/gmake -C eutils_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/eutils_client' /opt/pkg/bin/gmake -C hydra_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hydra_client' /opt/pkg/bin/gmake -C discrepancy -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/discrepancy' /opt/pkg/bin/gmake -C xmlreaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlreaders' /opt/pkg/bin/gmake -C hgvs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hgvs' /opt/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/netstorage' /opt/pkg/bin/gmake -C jsonwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86601 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C biosample_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/biosample_util' /opt/pkg/bin/gmake -C data_loaders_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' /opt/pkg/bin/gmake -C lapackwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' /opt/pkg/bin/gmake -C pmcidconv_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C cgi_redirect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83897 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc' /opt/pkg/bin/gmake -C gui -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/gui' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/gui' /opt/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2flat/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2flat/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2fasta/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/flat2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn_cleanup/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asnval/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/flat2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id1_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/convert_seq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id1_fetch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nmer_repeats/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/convert_seq/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objmgr/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/gi2taxid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netschedule/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objmgr/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netschedule/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/gi2taxid/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/grid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netstorage/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/igblast/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/grid/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netstorage/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/igblast/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/vecscreen/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agpconvert/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id2_fetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/vecscreen/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agpconvert/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id2_fetch/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agp_validate/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objextract/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/bdb_env_keeper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agp_validate/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objextract/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/bdb_env_keeper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/bdb_env_keeper/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nw_aligner/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/speedtest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/idmapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nw_aligner/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nw_aligner/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/idmapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/idmapper/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/speedtest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/speedtest/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/formatguess/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/multireader/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/read_blast_result/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/formatguess/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/formatguess/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/multireader/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/multireader/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/read_blast_result/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/read_blast_result/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/splign/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/hfilter/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/annotwriter/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/splign/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/splign/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/annotwriter/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/annotwriter/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/hfilter/Makefile.in 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tls/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /opt/pkg/bin/gmake -C asn2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2asn' /opt/pkg/bin/gmake -C asn2fasta -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2fasta' /opt/pkg/bin/gmake -C asn2flat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2flat' /opt/pkg/bin/gmake -C flat2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/flat2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/flat2asn' /opt/pkg/bin/gmake -C asnval -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asnval' /opt/pkg/bin/gmake -C asn_cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cleanup' /opt/pkg/bin/gmake -C id1_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id1_fetch' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96044 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96044 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96044 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96044 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastp_node.o blastp_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastp strip blastp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastn_node.o blastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastn strip blastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for Updating dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastx_node.o blastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastx strip blastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastn_node.o tblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastn strip tblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastx strip tblastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O psiblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o psiblast strip psiblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpsblast_node.o rpsblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpsblast strip rpsblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpstblastn_node.o rpstblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpstblastn strip rpstblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_formatter.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_formatter strip blast_formatter /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_report.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_report strip blast_report /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blast_report gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/deltablast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/deltablast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O deltablast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o deltablast strip deltablast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96022 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seedtop_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seedtop strip seedtop /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -C convert_seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/convert_seq' /opt/pkg/bin/gmake -C nmer_repeats -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nmer_repeats' /opt/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objmgr' /opt/pkg/bin/gmake -C gi2taxid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gi2taxid' /opt/pkg/bin/gmake -C netschedule -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netschedule' /opt/pkg/bin/gmake -C grid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/grid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/grid' /opt/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netstorage' /opt/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/igblast' /opt/pkg/bin/gmake -C winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11131 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11121 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11121 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] static inline char iupacna_to_blastna( char c ) ^ 3 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:234:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:234:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ 4 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' Updating Updating dependency dependency Updating information information for dependency for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/main.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o windowmasker strip windowmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -C dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker TMPL=dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11526 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker TMPL=dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11526 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' Updating Updating dependency dependency information information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o dust_mask_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o dustmasker strip dustmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -C segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker TMPL=segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11930 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker TMPL=segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11930 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O segmasker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o segmasker strip segmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeblastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_path -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeclusterdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcmd.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcmd strip blastdbcmd /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeblastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeblastdb.o masked_range_set.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeblastdb strip makeblastdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:594:18: warning: variable 'line_ctr' set but not used [-Wunused-but-set-variable] unsigned int line_ctr = 0; ^ 7 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_aliastool.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_aliastool strip blastdb_aliastool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcheck.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcheck strip blastdbcheck /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O convert2blastmask.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o convert2blastmask strip convert2blastmask /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcp.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lmedline -lbiblio -lgeneral -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcp strip blastdbcp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeprofiledb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeprofiledb strip makeprofiledb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:385:13: warning: variable 'vol_ctr' set but not used [-Wunused-but-set-variable] int vol_ctr(0); ^ 7 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_convert.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_convert strip blastdb_convert /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_path -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_path.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_path strip blastdb_path /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeclusterdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsimd.h:57: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if (!_mm_test_all_ones(_mm_cmpeq_epi32(nbM, nbA)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bmsse4.h:1635:13: note: cast one or both operands to int to silence this warning In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:60: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] bool success = m_DB->EndBuild(); ^ 7 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=4B1F8BBB-75A0-41D3-A246-BD80A60A315A /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeclusterdb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeclusterdb strip makeclusterdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makeclusterdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -C blastvdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' /opt/pkg/bin/gmake -C vecscreen -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/vecscreen' /opt/pkg/bin/gmake -C agpconvert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agpconvert' /opt/pkg/bin/gmake -C id2_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id2_fetch' /opt/pkg/bin/gmake -C agp_validate -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agp_validate' /opt/pkg/bin/gmake -C objextract -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objextract' /opt/pkg/bin/gmake -C bdb_env_keeper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /opt/pkg/bin/gmake -C nw_aligner -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nw_aligner' /opt/pkg/bin/gmake -C speedtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/speedtest' /opt/pkg/bin/gmake -C idmapper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idmapper' /opt/pkg/bin/gmake -C formatguess -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/formatguess' /opt/pkg/bin/gmake -C multireader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multireader' /opt/pkg/bin/gmake -C read_blast_result -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/read_blast_result' /opt/pkg/bin/gmake -C splign -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/splign' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/splign' /opt/pkg/bin/gmake -C hfilter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/hfilter' /opt/pkg/bin/gmake -C annotwriter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/annotwriter' /opt/pkg/bin/gmake -C compart -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/compart' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/compart' /opt/pkg/bin/gmake -C streamtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/streamtest' /opt/pkg/bin/gmake -C lds2_indexer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/lds2_indexer' /opt/pkg/bin/gmake -C discrepancy_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/discrepancy_report' /opt/pkg/bin/gmake -C biosample_chk -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/biosample_chk' /opt/pkg/bin/gmake -C bsdiff -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bsdiff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bsdiff' /opt/pkg/bin/gmake -C gap_stats -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gap_stats' /opt/pkg/bin/gmake -C table2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/table2asn' /opt/pkg/bin/gmake -C srcchk -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/srcchk' /opt/pkg/bin/gmake -C tableval -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tableval' /opt/pkg/bin/gmake -C ncbi_encrypt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /opt/pkg/bin/gmake -C ssub_fork -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ssub_fork' /opt/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cache' /opt/pkg/bin/gmake -C magicblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/magicblast' /opt/pkg/bin/gmake -C multipattern -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multipattern' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multipattern' /opt/pkg/bin/gmake -C prt2fsm -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/prt2fsm' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/prt2fsm' /opt/pkg/bin/gmake -C pub_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pub_report' /opt/pkg/bin/gmake -C gff_deconcat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gff_deconcat' /opt/pkg/bin/gmake -C sub_fuse -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/sub_fuse' /opt/pkg/bin/gmake -C feat_import -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/feat_import' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C split_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C wig2table -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C rmblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C dblb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C tls -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tls' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C idfetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/var/tmp//GMfifo86871 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app' /opt/pkg/bin/gmake -C sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sample' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sample' /opt/pkg/bin/gmake -C internal -j3 --jobserver-auth=fifo:/var/tmp//GMfifo10591 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/internal' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build'